NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134096_1000731

Scaffold Ga0134096_1000731


Overview

Basic Information
Taxon OID3300010273 Open in IMG/M
Scaffold IDGa0134096_1000731 Open in IMG/M
Source Dataset NameSwitchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 7_21_20_110_A3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32590
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (71.88%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading → Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa

Source Dataset Sampling Location
Location NameUSA: Dartmouth College, New Hampshire
CoordinatesLat. (o)43.726Long. (o)-72.1429Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038199Metagenome166Y
F063614Metagenome / Metatranscriptome129Y
F091897Metagenome / Metatranscriptome107Y
F093744Metagenome / Metatranscriptome106Y
F099151Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0134096_100073118F093744AGGAGGMGFKIGDRVEVNYPVDDFQGHVGIVKKIITDTELIPGKTLVICYWAFLDKEIAFYESSLDLI*
Ga0134096_100073123F091897AGGAGGMIGSSVSSFPNTQYQCCECGKYLGDKYSRLKGKKQPNVNIINGKQYCNKCADKYWND*
Ga0134096_100073130F038199GAGGMEYTQAQFLQLIQQYNSTDRKVIKANLKRIMDIYNIKPADIISLGYSPCNVYAWTNKGTKNIPMFNQALNIAVEFHFDIKEFLRNINIDNVKSP*
Ga0134096_100073140F063614GGAGGMTYRKLYITIDTLVETGLETVNVLGVEESQADLWQIYEICQELMAFWDSELTEDRIDELEEIIAELPLLKRA*
Ga0134096_100073162F099151N/AMRFREEIYKENGEIIKKYYIDDKEVTQDVYFNLTDELYENTKLKQDDHNEEICNCEECQYFLELINKIRQSPDSEALAILKDEIEFRVQEAYIEGQHVLANELGNSLLKHAVKLEDELENLYENGSLDEYNEDG*
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