Scaffold Ga0136246_10002137

Overview

Basic Information

• Taxon OID: 3300010236
• Scaffold ID: Ga0136246_10002137
• Source Dataset Name: Terrestrial oil reservoir microbial community from Schrader Bluff Formation, Alaska - SB1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale Center for Genome Analysis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7463
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Produced Fluid → Terrestrial Oil Reservoir Microbial Communities From Alaska

Source Dataset Sampling Location

• Location Name: Alaska, USA
• Coordinates
  • Lat. (^o): 70.4
  • Long. (^o): -148.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024777	Metagenome / Metatranscriptome	204	Y
F025938	Metagenome / Metatranscriptome	199	Y
F043669	Metagenome / Metatranscriptome	156	N
F058560	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136246_100021371	F024777	N/A	MKGVKMDAELIFAEDIEVCPKCSASEFWENRIIWIGDDPTDEELASIECKGCGTVFYARDYYRRRFGKLEDDEEEIPF*
Ga0136246_100021373	F058560	GAGG	MGKSDVRCPKCGKATNGVELIYPRTNEQEERRIKAFMCENCLYVFSESDVENNNYSFRNESLV*
Ga0136246_100021374	F025938	AGGAG	MAIIIPDKIVDLLSSMFEDVRDRQFIIGDTLIEIVNATGDKGGTIAYLAGRLGVSASTLYDYYRIAKLWTPEYRAMYQALDWTIYRNADPNDPEDRALLDLCVDNGWNASKFREEKYPALKDPSVIVGRMIALGKRIYEQDTLDIEQREAIHKAIGLLEEVMRELEVVEFADVKF*
Ga0136246_100021379	F043669	N/A	MDKLDLQSLISKMSIAADEEYYLTESDKLAILSAFHKCEKWLIALQSEGVINISEQELEYLRDLADNVKGDIDGKWSLDKPEYLAILITLQDYLNDIPCN*