Scaffold Ga0136447_1027279

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136447_1027279

Scaffold Ga0136447_1027279

Overview

Basic Information
Taxon OID	3300010232 Open in IMG/M
Scaffold ID	Ga0136447_1027279 Open in IMG/M
Source Dataset Name	Halite microbial communities from Salar Grande, Atacama Desert, Chile, 2016. Combined Assembly of Gp0154194 and Gp0154467
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Johns Hopkins Bayview Research CORES
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3708
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Geologic → Unclassified → Unclassified → Evaporite → Halite Endoliths Microbial Communities Diversity Study

Source Dataset Sampling Location
Location Name	Salar Grande, Atacama desert, Chile
Coordinates	Lat. (^o)	-21.0011111	Long. (^o)	-70.07138889	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F098766	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136447_10272791	F098766	GGAGG	MSHPTCAICGREADGAEHIKVEVERVPPEERAKIYYFHPRCFDNSQSWERGL*

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