Scaffold Ga0136236_1000035

Overview

Basic Information

• Taxon OID: 3300010230
• Scaffold ID: Ga0136236_1000035
• Source Dataset Name: Filterable freshwater microbial communities from Conwy River, North Wales, UK. Not filtered control. After WGA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Fidelity Systems Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20223
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Filterable Freshwater Microbial Communities From Conwy River, North Wales, Uk

Source Dataset Sampling Location

• Location Name: Conwy River, Conwy, North Wales, UK
• Coordinates
  • Lat. (^o): 53.2
  • Long. (^o): -3.82

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001629	Metagenome	660	Y
F078663	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136236_100003526	F078663	GGAG	MITWFAIQFTDNSTGYQKMEDGNCIGVYRADGTVISSEEAVEYTCTDMNATAPSWA*
Ga0136236_10000358	F001629	N/A	MILNQGKLAGGLVDELLEVVHKYDETLYMATVIGALELVKQQLIQDSIEDEDE*