Basic Information | |
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Taxon OID | 3300010230 Open in IMG/M |
Scaffold ID | Ga0136236_1000016 Open in IMG/M |
Source Dataset Name | Filterable freshwater microbial communities from Conwy River, North Wales, UK. Not filtered control. After WGA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Fidelity Systems Inc |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 31991 |
Total Scaffold Genes | 55 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 47 (85.45%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Filterable Freshwater Microbial Communities From Conwy River, North Wales, Uk |
Source Dataset Sampling Location | ||||||||
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Location Name | Conwy River, Conwy, North Wales, UK | |||||||
Coordinates | Lat. (o) | 53.2 | Long. (o) | -3.82 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F022833 | Metagenome | 212 | Y |
F037627 | Metagenome | 167 | N |
F048157 | Metagenome | 148 | N |
F049485 | Metagenome | 146 | N |
F061649 | Metagenome | 131 | Y |
F102396 | Metagenome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0136236_100001621 | F048157 | AGGA | MATTAEVGTPLKPKEAQPDIGVLDAIKKTRGEDEGKSMNALQVVQASMANQLPPGVTMDTLLRKLASALQDPNNKLVQIGNSAFLVTLVGDGVVEFHTFSAEQPQKLLKNYIGLANTLKKQGIKKATTYSDRPEFVDLAKKSGLPVKVGQSQKMMGNEMKPVYTFELDL* |
Ga0136236_100001639 | F049485 | GGA | MAHSGLQPISNILGSKDIQSLQLWLKRVGASMPDISTVERKIMENQKKPPFVPQEMKGRMTKNTYKKQGSSEPDWKGTFMYQGQVITFGAWENDAGFGPYYNIKLNDPNWNKQQQQYPKEVTDKPARSYPKDSEIPF* |
Ga0136236_100001642 | F102396 | AGG | MLLFKTKRLERLEQEVVMLEDLFAQALQRIDKLEEARWGLKVDGTPKAKPGRKVKDERIS |
Ga0136236_100001644 | F022833 | AGGAG | MATKLQDSLVRKIQENRELKDTIKDLHTQAEKDKEFLREVQDESNNLELALKKCIHSKAELNDKIEQLTDDLEKYTELYARATLVVTALGEAVFFLTKESNHGK* |
Ga0136236_100001645 | F037627 | AGG | MKPLICVDCKWHLASKSSSLIANYDRCKASENINLVTGESTYKYCESMRLADGECGMDAKLFELNQAEETPNGN* |
Ga0136236_100001646 | F061649 | GGAG | MRDQTDCHYPHTRLCLQDCEDGCRARKSVWRKRTIRELEDQELEDEAFARIPQHPYECKHLGICNDRPTHCLDCPSNNA* |
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