Scaffold Ga0136213_1000113

Overview

Basic Information

• Taxon OID: 3300010224
• Scaffold ID: Ga0136213_1000113
• Source Dataset Name: Soil microbial communities from Bangor area, North Wales, UK enriched with cashew seed oil ? week1, replicate 2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Fidelity Systems Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44696
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (71.70%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified → Soil → Soil Microbial Communities From Bangor Area, North Wales, Uk Enriched With Cashew Seed Oil

Source Dataset Sampling Location

• Location Name: Bangor area, North Wales, UK
• Coordinates
  • Lat. (^o): 53.24
  • Long. (^o): -4.01

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059118	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136213_10001136	F059118	AGGA	MLLIALMMGGILDNPPVHDPLVPPTRVTTSFTCHGTQRTITVAHGIGRDAVVSLTANGKPVVGTAMTAIRSGLAPLTAIDDVTPYCGDGPDRIRIKGWIEDKKRNLMIFFGPGGQAAVRDVG*