Scaffold Ga0136257_132112

Overview

Basic Information

• Taxon OID: 3300010222
• Scaffold ID: Ga0136257_132112
• Source Dataset Name: Halite microbial communities from Salar Grande, Atacama Desert, Chile, 2013
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1372
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Geologic → Unclassified → Unclassified → Evaporite → Halite Endoliths Microbial Communities Diversity Study

Source Dataset Sampling Location

• Location Name: Salar Grande, Atacama desert, Chile
• Coordinates
  • Lat. (^o): -21.0011111
  • Long. (^o): -70.07138889
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027696	Metagenome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136257_1321123	F027696	GAGG	MSTTQLNTVAANLDISEHDGERVIDFDIAANTDYEIQSCVMVDEDNRVVEAAVRFGRVEERDHLGIGKPILASAWSNMVSKVTGAEAVEGDLSDFSHIVPHLRVHRENVEEYGLETLSLD