Scaffold Ga0127509_1254250

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0127509_1254250

Scaffold Ga0127509_1254250

Overview

Basic Information
Taxon OID	3300010198 Open in IMG/M
Scaffold ID	Ga0127509_1254250 Open in IMG/M
Source Dataset Name	Peat moss associated microbial communities from Sphagnum species from Minnesota, USA - S1T2_Fd - Sphagnum magellanicum MT (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1112
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003575	Metagenome / Metatranscriptome	478	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0127509_12542501	F003575	N/A	KYLVHDLNPTCNSNNPNLTIIFFHGITFGTNDDWKETWTTRPTHNREQCICWPEKWLPEDLNNNIRILSLSYDSNIVASVHNDVIGIGKNLVQSLVTNSRCDNLFYLWTH*

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