Scaffold Ga0124923_1227422

Overview

Basic Information

• Taxon OID: 3300010196
• Scaffold ID: Ga0124923_1227422
• Source Dataset Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1200_T MetaT (Metagenome Metatranscriptome) (version 2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 805
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.539
  • Long. (^o): -110.798

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002229	Metagenome / Metatranscriptome	580	Y
F002795	Metagenome / Metatranscriptome	529	Y
F008135	Metagenome / Metatranscriptome	338	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0124923_12274221	F002229	N/A	VDYTPSDAEIRVALDDRALYGMVLNGVTWMRLVSGAGWWTVICNRRVTATLAAVGWCWVADGCGARGYWSPALACVPAEVRALCGGCVRDDDGDDEE*
Ga0124923_12274222	F008135	AGGAG	MNDPRTERVLTEAGAGIARVLDDCQRRAVALAIEACWYIVAALPPDGSVTFGDVVWLLRWFARGFNEGVEVDDGDE*
Ga0124923_12274223	F002795	N/A	MVASYREFISRKDGKTYRVATVFGDLMAGGTVLCQVDGYDVFVDSPGYTRGEMVELPARLQFVRDASGRPVVRLYVDEGV