NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0124924_1094379

Scaffold Ga0124924_1094379


Overview

Basic Information
Taxon OID3300010193 Open in IMG/M
Scaffold IDGa0124924_1094379 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1300(2)_T MetaT (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1546
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062336Metagenome / Metatranscriptome130N
F079733Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0124924_10943791F062336GAGGMSTVDFSIYKATEPVLTFVRCVWINPHPTKRDTPVEHGGIIWDAAEPVECSGKPFTVTYSSGKTQEVCGGQGFVVIPIRMSNPYTIVTSSDPAMLQQVIVPQPLYMRSDNVPDEFRVSSAVTFFFVLRDDPSNTLMSVQLRSHGATLLNRAYVEWVKTVAKLGNQLLRIPLDVRALPVKFGAGETVMVGRNQKSPIAAPVFKALRQYKTADELQSDLVPPERFKALLEMANDDMIKQYPAIPAVKIAPTLDEAYAALGAALKNEQQPKALPAEVKLARKVVDE
Ga0124924_10943792F079733N/AVWHLQNDNWFSEPMPAAQWREKCENELQRLCQSQHWIDVWSLPGDVSLPYDKRLTRVGQWCISRIDASYDDGRLRQLVIFTHFDGRVISETPTYMRGANDRLVKLVPGMEEYDDAWGFDDEGWLFYLEDIPRIWNNLYQRRLINAVADELLGLSLTMDWQGRLARLIRRLMSEGNYDDAIQVAACASARFEHEEWPGDNHFAVVRKQMMKVLATNEL*
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