Scaffold Ga0126306_10008700

Overview

Basic Information

• Taxon OID: 3300010166
• Scaffold ID: Ga0126306_10008700
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6328
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8692
  • Long. (^o): -122.4282

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009288	Metagenome / Metatranscriptome	320	Y
F020557	Metagenome / Metatranscriptome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126306_100087003	F020557	GGAGG	MSVRVRPNGAEIDRPVLVLAVAAMVVTALGAVWLVRAAVAGRPDYRTVRVDNQAALSLQIDAVDGDGGRMGLGLAGPQATTTFEEVPDLGGTWTFVVSYGGQEVWRQAVGGRELAGRGWTVQVPDAVTLELERQGYR*
Ga0126306_100087006	F009288	AGGAGG	VDVAAALWGGIIGAIVAATVYAGFVGLRLTRLDLLRFEGGLVLRDRSNMVYIYGALVQVVGGALLALVYRQLFQQLDSATFVGWGALLGLAQGVLAVLALPLLGRLNRNVRAGDEPRPGRFGRAYGGLTPLALLVASVVFGTWVGIVLIP*