Basic Information | |
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Taxon OID | 3300010162 Open in IMG/M |
Scaffold ID | Ga0131853_10001960 Open in IMG/M |
Source Dataset Name | Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 36798 |
Total Scaffold Genes | 33 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (57.58%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae → Sterculioideae → Pterygota | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany |
Source Dataset Sampling Location | ||||||||
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Location Name | Petit - Saut dam, French Guiana | |||||||
Coordinates | Lat. (o) | 5.0626 | Long. (o) | -53.0462 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000018 | Metagenome | 6467 | Y |
F032693 | Metagenome | 179 | Y |
F038732 | Metagenome | 165 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0131853_1000196010 | F038732 | N/A | VEKANKKMRNRKATRDDDIPGDVLKLLGEGGLNILSKLSNTIYNTGEWPQDFTEVTMIALKKKTKATKCSDYHTINLIAHTAKIIAKILRRRIEKKIEDVLGEDQFGFRRGKELGMQSG* |
Ga0131853_1000196012 | F032693 | N/A | MLTEDGRCTCEIKSRIAMAKAAFSKKKNLFTSKLDVNLRKKLMKFYVWSTALYAAETWTLWATNQKHLESFEM* |
Ga0131853_1000196013 | F000018 | AGGA | MGLIEVTRRRGRRRKKLLDNLKDSRRYCELREEALDHTVWRNHFGRGFGPVV* |
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