Scaffold Ga0114967_10083003

Overview

Basic Information

• Taxon OID: 3300010160
• Scaffold ID: Ga0114967_10083003
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1904
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039124	Metagenome / Metatranscriptome	164	N
F041754	Metagenome	159	N
F099299	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114967_100830032	F099299	N/A	MTKSELKQLIKEVINETLTVENYEDGIKDVKDRMSYLALRKQEKDYISKSKQSSSPIMKQHYMDMSKQVLAKALAILKNHKVID*
Ga0114967_100830033	F041754	AGGA	MNHMKLNKILEKYHQTNNEWGLHTYNFGKSTSLGKRIGWMYNELMMNGRIDVIHNDILSSINELDSVTEYFIRNVITRDNFVGDDVYDRLKPYNADPWNREFLVYYGNVIHPEYYSVKNRDGWDKVFISVYFNNMVAKYSGMHITNESKVPLMILYSTSVNGLNIYCLDVVKS*
Ga0114967_100830034	F039124	GAGG	MNTLLVSNSVGGMLKSHIDYPVINVQWVRMDNIVLWDYLTTLHLIDVDNSLVMFQGTLDIFYLRHRHKDDNVTKIDYNSDPWGRKFMINPSMYYCYVSCKIKIEVNIIVTTVNNMRVYCVDVIKDV*