Scaffold Ga0114967_10023232

Overview

Basic Information

• Taxon OID: 3300010160
• Scaffold ID: Ga0114967_10023232
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4295
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017266	Metagenome	241	Y
F034176	Metagenome / Metatranscriptome	175	Y
F048781	Metagenome / Metatranscriptome	147	Y
F093145	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114967_1002323213	F093145	AGGA	MDDDKIVSFTHDIDTVITKYQEDFSAAGISGILLSRVTLLMSHDTEVGKELLKFVWNKLDELEQSNPGQYL*
Ga0114967_100232322	F017266	N/A	MGKSQVNDLIKHFYANMTPTPKIKWQRLPGLKLQAYVDEIQPRGFERGLRETDMDPIAAWTDKCNCGTRMSFNVWKFKNEKQITMFLIRWAS*
Ga0114967_100232323	F034176	AGGTGG	MRHNYAKQRYSDQDLEYFISKFECRVEDSREYNQYVRPAPYYRDVCSSDDWRMETKITPMKAIHLTSDNLAMLVAEQERMELMESDAEYGKKLCNMLRADERVRDDNPAVAKAYRNYLTLLELARK*
Ga0114967_100232326	F048781	N/A	MSGWESLQRIKRIETQIDKLGFKFAKSKHSDWTDDHGALSLVPKDADALPAYSRDAELFVGSLERLEDWLAGVKWARDYDMLCRISTDEKRLDAEQKVRNRQLMRTIKEGKRVEGSVE*