NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114967_10020628

Scaffold Ga0114967_10020628


Overview

Basic Information
Taxon OID3300010160 Open in IMG/M
Scaffold IDGa0114967_10020628 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4620
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006112Metagenome / Metatranscriptome381Y
F007524Metagenome / Metatranscriptome349Y
F008493Metagenome / Metatranscriptome332Y
F014848Metagenome / Metatranscriptome259Y
F018539Metagenome234Y
F099293Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0114967_100206281F018539AGGAGMLNFNTAKNTIAKAKLVYNKQRQLYKLVVAFNVHIKEKDNGDIVHIFPTQKKCDYVSGDIIYETLQKDLEYTVACAKKQLRTDNIEFV*
Ga0114967_100206282F099293AGGAGMSDYKQRLDNALIQLQYIIDEEFEDNQTVQDAFNNLAIILDGESE*
Ga0114967_100206283F008493N/AMTSERGDSYIGLTRKSLPNADKVVAERWRKHRSRAVNENRLWALYIYLKSGGLAMNWTHEIIAVIRGRKEAYAYERELVKLIKPELNDQYL*
Ga0114967_100206284F006112AGGAGMKQDYTMYIYKTDRRTKSGERLVSTTVWPDRTAEGMKREINGLYWLYLPKDGYRFECVPTMKTVTNLMSGAQIQIPHDTPRACDPSSELYWSM*
Ga0114967_100206285F014848GGAGMTNYYDTIAEFERDGYDIIVDKTYEDMHPRDCFDDCCDVEQICEDINSGNLDWFMLRVRVLVEGLELGSAYLGGCLYKDAREVLTDGTAEDFIAEAMVEAKSQVYRLSKKFTELSYAVDAEGATA*
Ga0114967_100206287F007524N/AMLNKKELEMRKATKAHAVAINKLMLPLINTVAYITEDENDLGMFKMYADDIAHNIAALCVFNSTLDAEVLHDNIMRQDTCPREHFYTVLQYIEDNALINANAFCCR*
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