Scaffold Ga0114967_10013218

Overview

Basic Information

• Taxon OID: 3300010160
• Scaffold ID: Ga0114967_10013218
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6065
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Aokuangvirus → Aokuangvirus SCBWM1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039602	Metagenome	163	Y
F041725	Metagenome / Metatranscriptome	159	Y
F093765	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114967_100132183	F039602	AGGAG	MKRKRSRVENVGVQIFQGVIDTYFLTVPYDKKNRVIPSSVECAYNSDYFNVQAAVNMLKAL*
Ga0114967_100132186	F041725	N/A	LIERVGIGIVSTVERYYKKYNEKPNEANATAYCTWRLRLHRRLKNDRDLLDAINKARNLGIYDERPGKTCWDYKF*
Ga0114967_100132188	F093765	GGAG	VSDIIYPIDRLLANPRVFFAIANALGGPDGEILKSSFYDLIEHGFGDYEDPDEIEFDADEICFSIEDDGTVQLTLSTGLASILKPVEDEFRAQITNDHEMAATTAIYERIVKAICTANPAFTNDIALCSPPTPGNSYLRSEDGERFEGSFHLLTDPERRYAFNVDIIDVPNDILRATYKPI*