Scaffold Ga0114964_10039338

Overview

Basic Information

• Taxon OID: 3300010157
• Scaffold ID: Ga0114964_10039338
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2537
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027400	Metagenome / Metatranscriptome	194	Y
F061649	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114964_100393382	F027400	AGG	MTNAEIKLKLEQAQELLSDVYHWASTPMTNGLQVSPLATNAEIESLMSCADSCIGEALSALGEMTA*
Ga0114964_100393386	F061649	GGAG	MRDQTDCHYPHTRLCLRECEDGCRMRKTVWRKRTIKELQDQELEDEAFRKIPQYDYECKHLGICNDRPTHCLDCPSNNA*