Scaffold Ga0114964_10002041

Overview

Basic Information

• Taxon OID: 3300010157
• Scaffold ID: Ga0114964_10002041
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14330
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (80.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054798	Metagenome / Metatranscriptome	139	N
F074795	Metagenome	119	Y
F104766	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114964_1000204110	F074795	AGG	MTKDEAIVKILKVLKSPMAAVCKPRTDEVLTLAEEHGITVSEVIEAWINIAMRM*
Ga0114964_100020415	F104766	GGAG	MTAIENQWISFFDKQPEDGQGIWYYGQHIGVWSGEYRYSPEDPVSHHIMLCHESYGFVDRMDAPWWMVDDGVMNRPEKPSRPVPPDYPSG*
Ga0114964_100020418	F104766	GAGG	MEWISFFDRQPEHCQGIWYYGECIGVWAGKYIYDPDDPVSHHLMICSESPGVVDRMDAPYWQPRVGQTKPEKPSQPYPDDYPSGDNNDKP*
Ga0114964_100020419	F054798	GAGG	MIYLNSNDFERLAAIVAELVKLNMSVVAELRGTKWVIEVTN*