Scaffold Ga0114964_10001976

Overview

Basic Information

• Taxon OID: 3300010157
• Scaffold ID: Ga0114964_10001976
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14662
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (74.36%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007580	Metagenome / Metatranscriptome	348	Y
F013086	Metagenome / Metatranscriptome	274	Y
F029756	Metagenome	187	Y
F049634	Metagenome	146	Y
F067728	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114964_1000197617	F029756	AGGAG	MNKRKITTRVILDGAVDHTFTQMRQVYIDTTGEYVNCDRSKRYIVNDSFDIVYTTGKSITFTELADKIKETFRS*
Ga0114964_1000197626	F013086	GGA	MPENKMSEQELIGYTEREEGFYPLYAPGKGSIVTQAFIMCKYCRSAISPCMGPRYDAVCLTCYEKDPDERAS*
Ga0114964_1000197631	F007580	AGGA	MKTIILEKIGHALEAVYVFISDHLGRISAHTLGWITIILLHFASIPTLIAVLMAQSDRLPPVDLMVFVWSALITLFFKSLIERNFLYIATICLGFAAQTLIMGLILFK*
Ga0114964_100019764	F067728	AGGAG	MAQIEKPNVVAFRVELTEYERGWGSKPWDTLYFDNESEAKQYAVDYNKEHNTASSAPDWYVRADYAGQVS*
Ga0114964_100019766	F049634	AGGAG	MTYITNKFNSVNLPNEPGMIEWLQANYPRSEYRIVEIA*