Scaffold Ga0098047_10135017

Overview

Basic Information

• Taxon OID: 3300010155
• Scaffold ID: Ga0098047_10135017
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 957
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.201
  • Depth (m): 170

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011853	Metagenome	286	Y
F021104	Metagenome	220	N
F042929	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098047_101350171	F021104	N/A	QWKNMQKNYPKDWEDACEVDDKIRHGLKNTTAELFLHKSAKPLRDINFLEPKKQQNLFGETFDEEFADECEGLCGV*
Ga0098047_101350172	F011853	AGGAGG	MKPEYIKKKKEMLVKQHNTLKDKIDEGKTAIANMQAQLNGLVGAVQLCDDFLNNPEEPEKDK*
Ga0098047_101350173	F042929	N/A	MMGVWDPGKEKTVLSQIKKAVVGLISGLKQMTRVIVPGILIIFYFFIFFLLLSGCAYFKKEKKDEIIVTDLPPIEFICKKIDCGDEDIDKLVEDEQNTIACIKLQPECDPDQ*