Scaffold Ga0098047

Basic Information
Taxon OID	3300010155 Open in IMG/M
Scaffold ID	Ga0098047_10017076 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010155 Open in IMG/M

Scaffold ID

Ga0098047_10017076 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2926
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2926

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-14.509	Long. (^o)	-76.201	Alt. (m)	Depth (m)	170
Location on Map

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Source Dataset Sampling Location

Location Name

Subarctic Pacific Ocean

Coordinates

Lat. (^o)

-14.509

Long. (^o)

-76.201

Alt. (m)

Depth (m)

170

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F003270	Metagenome	496	Y
F008596	Metagenome	331	N
F025299	Metagenome / Metatranscriptome	202	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098047_100170763	F003270	N/A	LVKRTRRRKKKNGKGKTNIKSMARSWANKLASPVAFWSQLSEKDYQVLNATPEYRALDYLGKLKVASNILTGSLTGKVLFSDQYNPSPNGQPRINPSGIINKWTGIGVAGKIYSLVGKQMGLPEQATIGRIGTKLIYGGAVGGFFDPPGNPGGYISTASSSPNVMVQNRATTMRRNVQFQRNLSYDPSTVSALR*
Ga0098047_100170764	F008596	GAG	MSGSWDIATATSIGTGVAKTQINNGNNLTKPTQATNLVEVVPYISSSGAMTAGESLAVTLEIDSFSVDLLPKRIIVPPIQSGLGTTIMQINPLLEAYECNTGLQEGATSQFILSGTNQIAPTVATNLACALHYSTTPPNRPEHFYHKPDDETNFTTATTTSGNSFTINDGMWVEDLYVSTFTAVYTVSQSLTGYGSFESNDFGNSLPLKVPSQPGCASLGATGSQGILQLASYHNVHMPMKTSCKINTSYTNDITQTGTTSFIMGVGYTKQG*
Ga0098047_100170765	F002100	N/A	VLHDGRVEVDEVNQFITDSDKMELVHAGNDTDFDTSFEWLPDMSFQAYKASFSLAVAMKVSAHTTGNFKISSVQLTMKSVGGGEGDQIIVDKIINPGMANMAGTGEQVAILNVDTKTSAKIADKSVTITVKVNTDSGTGTYQVGLVPLFCYFGSAVPKTWTTSSVVVHAHADLAHAFPIFRDEDNMNMLDRSGIGL*
Ga0098047_100170766	F025299	AGAAG	MIDQIPFFTEFIVLGIVLGFGYGFTKLFLGHAKDKNKIKRSEAKKKQESSLEDELDSYINNAPAIAQKIQAELNYLKENNATPEQMKSLESKLDLLQKVQQYEPIIKIAGKPLLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098047_10017076

Overview

Ecosystem & Geography

Associated Families

Sequences