Scaffold Ga0127503_10536637

Overview

Basic Information

• Taxon OID: 3300010154
• Scaffold ID: Ga0127503_10536637
• Source Dataset Name: Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1122
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location

• Location Name: USA: Willow Creek, Wisconsin
• Coordinates
  • Lat. (^o): 45.8056
  • Long. (^o): -90.0794
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F089063	Metagenome / Metatranscriptome	109	Y
F101377	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0127503_105366371	F101377	GAG	VSGQNGSDNGAHDHVGLTLERHVPNAIPPLVDAVSSLYEHAIDRLLLSPERVTSAAAGKKLLAGDDDTEVMADQVQRVVVLAVPVVRTLARGARFTRVPWVLVASTAFSIASTLRAGVREVQVIGSLIAHRIEEETGRPAAPRLVKRLALELYLTPRRTPATTDSALPLRRLLQRWLFKGAFGRNTQRAASKALDAAEK
Ga0127503_105366372	F089063	GGAGG	MTNETPDRPTIDEHPGLDNDEATDEGKVLTAEGSTEFPDATVVPPTLDDHPGLDNDEAMDEGKQMTAEGSTGETPGESDPA*