NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0127503_10212503

Scaffold Ga0127503_10212503


Overview

Basic Information
Taxon OID3300010154 Open in IMG/M
Scaffold IDGa0127503_10212503 Open in IMG/M
Source Dataset NameSoil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)693
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location
Location NameUSA: Willow Creek, Wisconsin
CoordinatesLat. (o)45.8056Long. (o)-90.0794Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004378Metagenome / Metatranscriptome441Y
F059766Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0127503_102125031F004378N/AMSEGDAMSDLDRLEAAAGECREMIREAHAATKDLRAAVREAKSELHALTRDEVAAHIQLEVSRQLEELDGRTREAISAATQKVIAEFDRFGESLLGK
Ga0127503_102125032F059766N/AFIGARMVVKGTASHFQRLIIKERLEGGHTRPAWWMYIFPFLHWRFDWERDHWHGELEQNQHTAAHRAILALCVLLFALLAFEGWHILTYLKPPWE*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.