Scaffold Ga0098059_1392746

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098059_1392746

Scaffold Ga0098059_1392746

Overview

Basic Information
Taxon OID	3300010153 Open in IMG/M
Scaffold ID	Ga0098059_1392746 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	524
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-16.21	Long. (^o)	-76.63	Alt. (m)		Depth (m)	55
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030873	Metagenome	184	N
F068116	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098059_13927461	F030873	GAGG	MLFKRNDKIAIVVKPKTHEGLTNEKDYFTRYGEMRKDSKFLVSKNIITFWDTQKDSFRSFNLSDVVSITNLSRTPLEINKKEQEKKEREKMKGYNC
Ga0098059_13927462	F068116	AGG	MRSQISDYELMTFFNNLKEIIQAQKELNHVLAKRITNLENRLEKKESEVIDVV*

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