NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0098059_1054149

Scaffold Ga0098059_1054149


Overview

Basic Information
Taxon OID3300010153 Open in IMG/M
Scaffold IDGa0098059_1054149 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1610
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.63Alt. (m)Depth (m)55
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046008Metagenome152Y
F049238Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0098059_10541491F046008N/AMAKVLTNVFAVGGKVVKRTYAIYGGLIPPFTMELHGERYIMPGWYKLKQDEETPNIEDIAYYPYKPKIANIPNEHKNKVYKVLSSKGDKEYEVSVNSSGDFNCTCPGYGFRRRCRHIDYVKKELLALA*
Ga0098059_10541493F049238AGGMSRLLDELLKEQKRLKASGWKPRFRGDTGINVCQVMIDKDIELRDQHDRGLVGTFKELKNNK*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.