Scaffold Ga0098059_1045421

Overview

Basic Information

• Taxon OID: 3300010153
• Scaffold ID: Ga0098059_1045421
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1771
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005524	Metagenome	398	Y
F014465	Metagenome	263	Y
F024106	Metagenome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098059_10454212	F024106	GGA	MEESTFHSSFQVGDLVTLKHHPGAPLAVVVSLDAIVFDRIQIQFFDTDRPEMVEPGHWKVVSRND*
Ga0098059_10454213	F014465	AGGA	MKLRGMTMIGALVRDCSMIMKIVTGYKCNQRGEYIQFVGDGATMWYPLENFEILSAED*
Ga0098059_10454215	F005524	N/A	MNLLRGKEMTVGDKVQHYATGSIGTVIDSTYEAETPFQQMCVLWEDDLAPHKDSWERIEALSIIPHEPYVYSFPD*