Scaffold Ga0098061_1023247

Overview

Basic Information

• Taxon OID: 3300010151
• Scaffold ID: Ga0098061_1023247
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2536
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -15.59
  • Long. (^o): -75.37
  • Depth (m): 65

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003330	Metagenome / Metatranscriptome	493	Y
F030754	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098061_10232475	F030754	AGGAG	MARTPKGNNAFALANGNRQAADLTHGVTCNYAGGCRVFDANISKKHELRWLCEHHGGVKHSRANARDEEYANGIPGAERRMRFARVRAKQRKAAVFTGHIPSFLDPRPVTPKPKAKKVAPVVQAKSAKQLRREAAMAELGLTEADILSAFGA*
Ga0098061_10232477	F003330	AGGAG	MRKHDAWGKPILKVGDIVQSLPLKDDPGTVMKILQVNANGAWVVAVKWFTWDGGRTTEEYITELELMSEV*