Scaffold Ga0098061_1012696

Overview

Basic Information

• Taxon OID: 3300010151
• Scaffold ID: Ga0098061_1012696
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3589
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -15.59
  • Long. (^o): -75.37
  • Depth (m): 65

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055656	Metagenome	138	Y
F081887	Metagenome	114	Y
F082712	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098061_101269610	F055656	AGGAGG	MEIFGIILLMNLCIFGYFTYSFMQFRKNEKYRTQELNHKVQCLLDQAQIDYQAEREAELNEKPVNNIFREHVIEEISKQRLIYDEATGRYIRLRQIK*
Ga0098061_10126965	F081887	GGA	MIIEKNTICYTSEMGHNNFWYPSQNKLLIKVNCEAEKVSWISGGNRIPIKILKSCLLPLDITENTTKNISPPTKNEYTIVWIEKNV*
Ga0098061_10126967	F082712	AGGAG	MEKTPKKWQKVRIFDNYDDANELRCVLKDNDDTGLLEVKVRRCGPEGSQFKVKKYFPEPKKGK*