Scaffold Ga0098049_1002962

Overview

Basic Information

• Taxon OID: 3300010149
• Scaffold ID: Ga0098049_1002962
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6339
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039087	Metagenome / Metatranscriptome	164	N
F061769	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098049_10029625	F039087	GAGG	MQNTNTKTARSIVRNILKQNNVMYSPHSYTNKCADSNLRNLCFLTKNLSDEVLEHIELNLNVAKVHATKPKFYNVHPDARYLRIVHCAK*
Ga0098049_10029627	F061769	N/A	VLYCKYKITKRAKMFKLAYCDKIADTIKKALRQTDPDGIIADAGPITSDLDPVGGWFVSPKKTLTVHDRNGKAYVVTIEEAPFLDKDQ*