Scaffold Ga0098049_1002283

Overview

Basic Information

• Taxon OID: 3300010149
• Scaffold ID: Ga0098049_1002283
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7312
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008563	Metagenome / Metatranscriptome	331	Y
F010105	Metagenome / Metatranscriptome	308	Y
F100883	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098049_100228310	F100883	AGAAGG	MNFHNIIFKRRDGIGLGGFKSRTHFTNGLSLSVSAGEGIYCSPREDRSSINQYLTFEIAVFDADDNFITKTFFPDHNDDVVGWLSRDEINDLMNRIANHGKPQKDIPGFEGTLDQLNKLKI*
Ga0098049_100228312	F008563	N/A	MTKKFKIESHMGIAFSTIGGQKYLFPGWIPVEDHISFDDVEVINPYRNIKRETFEVLGSTGNKYTVTKNGNRLSCDCPAGKFRGTCKHSKKIAAELKLS*
Ga0098049_100228314	F010105	N/A	MDTIKKMVLDYAEKKGKSKWKELQSLIVKHKDLDPNDRSNRGYFSSYFSGGSDFMKRRGYDPNKGKHGRGSNSHGLLMRPTKKDPRYLEKDGKDYIVKVWDGKSKLS*