Scaffold Ga0098043_1181341

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098043_1181341

Scaffold Ga0098043_1181341

Overview

Basic Information
Taxon OID	3300010148 Open in IMG/M
Scaffold ID	Ga0098043_1181341 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	588
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-14.198	Long. (^o)	-77.499	Alt. (m)		Depth (m)	38
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043623	Metagenome	156	N
F054920	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098043_11813411	F054920	N/A	KDMNEGFSVFTRQTRVKEHYKKIADSGVEFYTCDDDDLDKEYGMYYGNLEFDPLDIMESHSGHTKMFHKDNGKWLQL*
Ga0098043_11813412	F043623	AGG	MFKRIKKSEDDPTLEQAQKFVKGWVERLVLSTGTLLVDESARMKQGMKKNKAASFLANKDGYPDILGPAIFIPHEIKSEWY*

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