Scaffold Ga0098043_1169394

Overview

Basic Information

• Taxon OID: 3300010148
• Scaffold ID: Ga0098043_1169394
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 613
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052942	Metagenome	142	Y
F070089	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098043_11693941	F052942	GGAG	MLSYKGKEKEMKVWVMQGRYEGEVFNSVHFTQKGCVLACISDILEFHDIDSAEEALRVMNDCNTY
Ga0098043_11693943	F070089	N/A	VGDLVKFESVLNDSMDRHTVEHGLVVQLSKTGHDTLSIQVLFNNGETWWVDSGRLEVVSESR*