Scaffold Ga0098043_1029313

Overview

Basic Information

• Taxon OID: 3300010148
• Scaffold ID: Ga0098043_1029313
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1736
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006892	Metagenome	362	Y
F046315	Metagenome	151	Y
F058519	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098043_10293131	F006892	GGAGG	MSDMGIIKPLRDRVRDLEEINSAHQKKNGQLRQEIQDKNKLIEELTERINNPTKKM
Ga0098043_10293132	F058519	N/A	MANHLKIIGEAYENFKDTNTSVSANKEPDSYRAMKRYFLNSEQRDKCKNASLVLGGIAHDVNEKSLVENISVEEAIADKKIQQKINSYVSIDMKDQMKFEFGIKFLKDICENHNKNIKELPDKKWKKEIEHIKWIEPVNVPFRMYVDLTGDTYINDLKNKFPSVKLSPLKTKQTKENPNRIGDWVCSHPKLDARVFTSDLMQIALYSHTTGLKPSLSYASATDRILFTEDNCEELKPENLKKSLQELIVYEIAWEKKLKAANGSVEELLWLCPPDFSELRKGSFWWNGVPKKFMEDYLKTYV*
Ga0098043_10293133	F046315	N/A	LKKYNKKIVDFVRDTYAPKEQKNKLAQISKILNPKKDAPHYYTINDLAYDLSTWVNNFNTSNVSISPQFFMGENVQIDCIGELFGNGQIGLHKPKDFHKINIHPKYVSFKAIECQTEHKRGLMMLFEPTKIIDRNANNRTAICQDKKTKVIWFGFIDPQSNGKYNILDKSQSTGKTIGKLAENIELSWSAEVKAAYYPNIYNI*