Scaffold Ga0098043_1009287

Overview

Basic Information

• Taxon OID: 3300010148
• Scaffold ID: Ga0098043_1009287
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3277
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium minihomine (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041865	Metagenome	159	N
F045138	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098043_10092873	F045138	N/A	MTFNTINTNKNFFDNQNFAFGVEPEFNTRSYTEMNRYNRLGSNSIKGLEYVYDGSRVDGEARLPILSNSQKSYNYLKSVLEQLNDHGATVNWTCSVHVHLSRRPITIDPNDFHDKSIEYTARTNSALPSRDGTDYFGSAIPLEIAKDIGYRVSKNKDQFNSFLAPSRIDDGGYANQAMRRANQKNGYFCKFPMAHNTIKNTELTWHKLKRVISVGGKFSAINLNHWDSKETIEFRSHGGTLEIDKIWAWMIFLSNMQSHSILNRHNQIQAVQNTPSYIGRSSRTRQSIAYSLMRRVGGATTQEIMDASGIQTAQRVRSMISEQIRPTLVNQFGRDILITHNQQHYNHRYSASQGRYDLNGYEIPLQVNNGSDGAVFSSNGGTDLLLGLDNQYKSNLKPFRN*
Ga0098043_10092875	F041865	AGGAG	MKRNEESYAKVKNKEMLTYRNQMGVSQVAMAKKLGLSHRMWNHYEHGTKQVPISVVLSAKYLCKNMDKMDELHDDIKQHEEPLTKWDVDRIEALMKKMKDDISTNSEIVS