Basic Information | |
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Taxon OID | 3300010148 Open in IMG/M |
Scaffold ID | Ga0098043_1006330 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4035 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (18.18%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Subarctic Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.198 | Long. (o) | -77.499 | Alt. (m) | Depth (m) | 38 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F047058 | Metagenome / Metatranscriptome | 150 | Y |
F049552 | Metagenome / Metatranscriptome | 146 | Y |
F074752 | Metagenome | 119 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0098043_100633011 | F074752 | N/A | DGDPYFMVGDTTYYLNEFMKTEGDYDGVASITNTGGIGINIDEANKQVEYTIFAIAPFSL |
Ga0098043_10063302 | F047058 | N/A | MEKKIDKAFTCTECNNSDNDKLMIIRDAPWVVECTVCGHPNDARWDHDMIDVF* |
Ga0098043_10063309 | F049552 | N/A | MMKDQDKEFWNVIAGMNFNMRGHEAAGRWLVEDSGLTLSEIKQIHKTAVRKHNALYNKLNAARIGSDDGFDDVLWQTIANGHEAFHNTTVEDLESMYDENRYTESFGYAFHAVTDIEDEQFAANQFLKQERYLEEVRKGFGGGFETKLIKAFDHADGNNKRKLALGFPELFEHLVD* |
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