Scaffold Ga0126373_10125143

Overview

Basic Information

• Taxon OID: 3300010048
• Scaffold ID: Ga0126373_10125143
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2410
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047354	Metagenome	150	Y
F058603	Metagenome	134	Y
F097107	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126373_101251431	F047354	N/A	MWVSGIAWTVSWSCLGLEIFHWHHVTKTLHLNPPTVPPGHPKPRPGHFLLSVLAGSALAPVAFLAAAIAARAGK
Ga0126373_101251435	F097107	AGGAGG	MLLGTLHPAVRLVVGVVAVVTGVVMRKVFLDVAGAAVILLSAAQWLSRSRGAAAGRSRRGPGR*
Ga0126373_101251436	F058603	N/A	DVPVINHPVVRIMLGAALAAAGLVVLHHNVIITAAGAPVLITGLVRGVSALTGHARKGQLR*