Scaffold Ga0126384_10001242

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126384_10001242

Scaffold Ga0126384_10001242

Overview

Basic Information
Taxon OID	3300010046 Open in IMG/M
Scaffold ID	Ga0126384_10001242 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama - MetaG Plot_36
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	15076
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032982	Metagenome	178	Y
F035897	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126384_1000124213	F032982	AGGAG	MDDDMKALVQQYIDVRRKQRNDLMKELELTEEEADQAVSTLELYYHIEASEDQWTQAWKAAKRDFLAEGERTGIRLADLVVKYIDIARLGGGPESRWT*
Ga0126384_100012424	F035897	GGAG	MMRLRLGLAMGMMILLTFGACERQGPPPKPIGSATNKHVEETPASPSRLDADAMIQNMKTPMENARQTEDLLKGAADRTQQQSDQTTR*

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