NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126310_10015245

Scaffold Ga0126310_10015245


Overview

Basic Information
Taxon OID3300010044 Open in IMG/M
Scaffold IDGa0126310_10015245 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3705
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8711Long. (o)-122.4276Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000756Metagenome / Metatranscriptome905Y
F002196Metagenome / Metatranscriptome584Y
F003251Metagenome / Metatranscriptome497Y
F039964Metagenome162Y
F088404Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0126310_100152451F039964N/AMGFSLGHTVADFGIIFGTLSSGFGVQQSLLSALIAVLYTWWAWALAKAVGGAKSWLVGLMVFDVLWVGGNGLTILACPPPCSAVPVYADALHLGNLILAPLATYFAYRAIRRISGPTSWLVMVGNIIIGLA
Ga0126310_100152454F002196AGGAGGMEHVTEDAQALIRAAREVHVERHGAQTFLPGTRLSFLEAAKRAGIRPDRQRFYDAIDDLEYEGAIEWDESARYARGDKHYLITRRGVHDLGSSVGTVPIQESQRKLFEG*
Ga0126310_100152455F088404N/AVVEIRGIPYCEECAREQEVYFAIGKLTQEETRDLRSEPLSKSLGKTLSEMLDGMRRQRTDDLAAARRLDLPREYKPGVSRLRKAKQS*
Ga0126310_100152456F003251AGGAVKVQTKTYTTEKEAKKAAARNYRPAIVRLPNGRYGCFQAGDILPHGARAVSRWSADRWRAYN*
Ga0126310_100152457F000756AGGAGGMIDRERPSASDSEGKIPEAWIGQEVMIETTEVLSSDLRASAPVYLEDVNDRGVVMLVTRHRDQNQFSRYFYPWSVVGWIRLAEEDEQAD*
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