Scaffold Ga0126310_10002978

Overview

Basic Information

• Taxon OID: 3300010044
• Scaffold ID: Ga0126310_10002978
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6932
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8711
  • Long. (^o): -122.4276

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001262	Metagenome / Metatranscriptome	735	Y
F004681	Metagenome / Metatranscriptome	428	Y
F024164	Metagenome / Metatranscriptome	207	Y
F083162	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126310_100029782	F004681	GAG	MNPLAFRRLLTGKRLSGLDRIAAAYAIGEHSVVVETTGGREIRITAWYDRARNEYIAEYERRSVVKSGGHDFRVWGQTPAYKRCTAGDAASCLEAAVLEVDRINIF*
Ga0126310_100029787	F001262	AGGAG	MPLGDEIDEVIRREVKSLPAYAKAQAAGGSGVAPPVEEMNQLLMGLVVGVQRSLHLLADRIEDVENRST*
Ga0126310_100029788	F083162	AGGAG	MSSATESPQGSAQLRRQKELTERLCITPVRRSKGTNLKWSTWKWRLGMRGEATP*
Ga0126310_100029789	F024164	AGG	MNEQGPPQITNSELIAKLEAILLDLRDRLESYLELGANDVIAADEGFNFAGYLEATLSDASEGAARVRERLIEIQRLQP*