Scaffold Ga0126380_10310227

Overview

Basic Information

• Taxon OID: 3300010043
• Scaffold ID: Ga0126380_10310227
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1127
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019178	Metagenome / Metatranscriptome	231	Y
F033469	Metagenome / Metatranscriptome	177	Y
F038374	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126380_103102271	F033469	GAGG	MGIDSETLELLNLWRGLSAEAKARMLEKARLVALAAGLEKTPEFEALFELPADDVLSE*
Ga0126380_103102272	F038374	GGAGG	MSTWVLITYMLNAEAVVAIPGQDPHIVSQVEFRSHELCDQARQHQAHTDAQSGIADQFIYKCVERKAQRS*
Ga0126380_103102273	F019178	GAG	MLCLLTLSACAGQTVTDAGAGRYSVTATSAHGVVAARERAVKLANTYCSRSSQQAVVESFDDVRLGGVLGDPTSSIVFRCGVPNTTALSR*