NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126380_10278965

Scaffold Ga0126380_10278965


Overview

Basic Information
Taxon OID3300010043 Open in IMG/M
Scaffold IDGa0126380_10278965 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1175
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025541Metagenome / Metatranscriptome201Y
F031220Metagenome183Y
F047352Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0126380_102789651F047352GGAGMRIFGYLGTGFLIVWLLAPAPMALADTAIQVATPDGTQSPSPPTPEEDLLNLLD*
Ga0126380_102789652F025541GAGGMPMTLVLVMAFNILVALGLGFLVGRIYQIRRDELERRVEPPRTAYIPPS*
Ga0126380_102789653F031220N/AMSVLDDFARMRLYQTRASDFELLAETEPLREARLRYRIIARHYRELANREERADKARMAQRLELLKLKRRQAAE*
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