Scaffold Ga0126380_10078227

Overview

Basic Information

• Taxon OID: 3300010043
• Scaffold ID: Ga0126380_10078227
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1904
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000788	Metagenome / Metatranscriptome	891	Y
F042506	Metagenome / Metatranscriptome	158	Y
F068584	Metagenome / Metatranscriptome	124	Y
F089331	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126380_100782272	F042506	GGAG	MKPVQACSICGGAIVGFGNDAWPVNDDRCCDQCNAERVIPTLRFRERDAKRESSNGGGLQMIDLNDIEDDSFLAINATDLRWLYDLWVQLAHESRPLDRQAAAKRLADVLENAEFF*
Ga0126380_100782273	F089331	GGAGG	MSELRMLSLAAAIAALVAYYSIQFYHLAVEPARAHATEHGR*
Ga0126380_100782274	F068584	GAG	MSNILKPIDLADRAIRRAVFAVLDAAEHRANGKGSERLLWMQERDKHQVRVFIGGRP*
Ga0126380_100782275	F000788	GGA	MKPRTVYEKAVQDFTETARQLARQNQHFRQASFAEFEMLMGFDDGVLKRYGLPKPMVERALLEAYQTVVL