Scaffold Ga0126380_10000055

Overview

Basic Information

• Taxon OID: 3300010043
• Scaffold ID: Ga0126380_10000055
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24580
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006370	Metagenome / Metatranscriptome	375	Y
F058464	Metagenome / Metatranscriptome	135	Y
F079242	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126380_1000005516	F058464	AGGGGG	MARDEDLTGATTASDSGTWFADYSARFAKTAEDTARVGAAAADRWARRSLADSDWTVDTVTADIIADWEEMTPLMGRWLDLWLEALQQPIWGARRRER*
Ga0126380_1000005517	F079242	GGAG	VNADRFDGSQDEWRDLVRLATGRMEEYAQLWEGAAAKLSDSSYRSEDLIDDWFTFWGKAIRDMTAGAAVLWAAGMRDAQGRGPMRDDRPGG*
Ga0126380_1000005525	F006370	GGAG	MVPYDTYRIHQIERAKSPAEVRRADEQAARVALAIASLFRGITGLMRAARRPAPAAVPGMPRPA*