Scaffold Ga0126308_10013018

Overview

Basic Information

• Taxon OID: 3300010040
• Scaffold ID: Ga0126308_10013018
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4282
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8708
  • Long. (^o): -122.4274

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009947	Metagenome	310	Y
F023050	Metagenome	211	Y
F079464	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126308_100130181	F079464	GGAGG	LAGYLPKEWNGQRVAVRFGSGRGFDARLVENNAGG
Ga0126308_100130182	F023050	GAGG	MSLRGWMKRLERRAREDLESFELLDGSTYYYNRLETHKELFLHAYDVQLGEADKWPVPPEVYRKMCEAKNPAAVVERLNPEDPQRAFVNLAELYDTDALVHERRLVPLAHAPAEDLSE*
Ga0126308_100130186	F009947	GGAGG	MSATPGKAVEPWDCEWAAERAADARKYLGRHYPECLENLRALDEYEEAAHEAAMASDKDAYLAALRSYCRAGRDEALRIRRGAA*