Scaffold Ga0126308_10005815

Overview

Basic Information

• Taxon OID: 3300010040
• Scaffold ID: Ga0126308_10005815
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5838
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8708
  • Long. (^o): -122.4274

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011187	Metagenome	294	Y
F014785	Metagenome / Metatranscriptome	260	Y
F016368	Metagenome / Metatranscriptome	247	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126308_1000581511	F011187	AGGAGG	MDFDFPAPYDHEVPRRIGEARRHLSSEGVAVLEGVIAETGNLEDVIVAMESLPASDRRVLVDVSRFFAEAYDARIRESEGWAGLQRHLAALILRARELDPSLRAGATLGEALVVLKRHGEPLGISDEVLEIAVEMTEE*
Ga0126308_100058153	F016368	AGGAGG	MSGLVVLKAHKVNKMLPPGYRVDHDPDVAVLRRPDGSVVSYFPIWSMNAKRLLQEAKLDLASGHLANS*
Ga0126308_100058159	F014785	GGAG	VATLYCPCGQSHELWGEFWWTEGRYQWVFFDYEQTSETYAEQVENCPACGRRLERKNLLS