Scaffold Ga0126309_10025445

Overview

Basic Information

• Taxon OID: 3300010039
• Scaffold ID: Ga0126309_10025445
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2641
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8707
  • Long. (^o): -122.4274

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007281	Metagenome / Metatranscriptome	354	Y
F030872	Metagenome	184	Y
F079464	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126309_100254453	F030872	N/A	LAVRCAGTKRDDSPCTATVEPPQRFCWWHDPANADKRRRAASKAGKSKPSRELAGIKQRLSDLADDVLEGRQDKGVAAVASQVLNVYLRAVTVELKVREQQEFIERLETLEERLGRDGGGRRWRA*
Ga0126309_100254455	F007281	AGGA	VEEASRLIRREGMAEEQYYALCVEKEDGSTQIAFFELGGDALAGALGISVYTAPDGELQRRHLQDGQVVIAAKSPRDLLEAMNTGVPSSVYVDGEKLAGSVFKAKLKDALGMPLRLPRIVRPDPDPE*
Ga0126309_100254456	F079464	GGAGG	MAGYLSKEWNGQRIAVRFGSGRGFDARLVDNNAGGITVEAI