Scaffold Ga0126309_10001596

Overview

Basic Information

• Taxon OID: 3300010039
• Scaffold ID: Ga0126309_10001596
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8107
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8707
  • Long. (^o): -122.4274

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052960	Metagenome / Metatranscriptome	142	N
F061635	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126309_100015963	F052960	GAG	MSFRIGIPGYLKATVVLGVLVVLAGCGGGSSAAKTSDVEKAILVRSPDSSQVTCMRHGSYHGKVLFRCQADVATSVREMRPESSCYTFEHGKLDNVTRHVSC*
Ga0126309_100015964	F061635	GGA	MRKLIIALIVSLGLLAAAPAQAGIPDLYSGSWPAKLMPSNEALGTITWVPVSEEWGRGVLDQPWGGAPFTNCPSKGQTRFFLGRYGTGGKLIACTVGSDGRRLHGRYDGQGGEFRPGSFDVSIITAPSDDEQEFEGVYVEDGGITTDWCGELINSTRPDVLSPRVSVLPSFGRVGKPVHLRFSASDDRNLVRVHMTVKRAGKIVGSVTSALRRVDGRPSWVLWRPRKHLSGTFALCARAWDRFGNASARSCSTLRLK*