Basic Information | |
---|---|
Taxon OID | 3300010038 Open in IMG/M |
Scaffold ID | Ga0126315_10110965 Open in IMG/M |
Source Dataset Name | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1585 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | UC McLaughlin Reserve (Lake County, CA) | |||||||
Coordinates | Lat. (o) | 38.8724 | Long. (o) | -122.4268 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F023705 | Metagenome / Metatranscriptome | 209 | Y |
F033945 | Metagenome | 176 | Y |
F035469 | Metagenome / Metatranscriptome | 172 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0126315_101109651 | F035469 | N/A | VLVDRESIDGLNAFRLPFGYYLELGADLLILRRSEGSFVAAFSTLGADPFEVELAAWEDAD* |
Ga0126315_101109653 | F023705 | AGG | VNGKEKTNALESREARIGTLVGVLDGAAKRPGKGHVGTIEQTYGHPDCLAMDVRFDDGSVELYWYHELRRMDGGVLP* |
Ga0126315_101109654 | F033945 | N/A | MADENAVLDEAMDNLKEAGQRIRATQSLMRSQGMIDDADYRELVSRLSTSLAMVEAAYMEARRRG* |
⦗Top⦘ |