NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126315_10110965

Scaffold Ga0126315_10110965


Overview

Basic Information
Taxon OID3300010038 Open in IMG/M
Scaffold IDGa0126315_10110965 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1585
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8724Long. (o)-122.4268Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023705Metagenome / Metatranscriptome209Y
F033945Metagenome176Y
F035469Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0126315_101109651F035469N/AVLVDRESIDGLNAFRLPFGYYLELGADLLILRRSEGSFVAAFSTLGADPFEVELAAWEDAD*
Ga0126315_101109653F023705AGGVNGKEKTNALESREARIGTLVGVLDGAAKRPGKGHVGTIEQTYGHPDCLAMDVRFDDGSVELYWYHELRRMDGGVLP*
Ga0126315_101109654F033945N/AMADENAVLDEAMDNLKEAGQRIRATQSLMRSQGMIDDADYRELVSRLSTSLAMVEAAYMEARRRG*

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