Scaffold Ga0126315_10021523

Overview

Basic Information

• Taxon OID: 3300010038
• Scaffold ID: Ga0126315_10021523
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3248
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8724
  • Long. (^o): -122.4268

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000230	Metagenome / Metatranscriptome	1517	Y
F001245	Metagenome / Metatranscriptome	737	Y
F006339	Metagenome	375	Y
F048770	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126315_100215231	F006339	AGGAG	MQNDQSAQDARKLLVALSTNHPEARRASPFVGMDRPFSPSWADAEQAGLDRIRRDNAMRWLIDNNMLELQEEAEYQRSEGKELPDYDYVYGAVFRITDPGRELLKE
Ga0126315_100215232	F001245	AGGAG	MSEKALGMLKHMRKQIFGHPAPYVEVRGAAVSIGVDPGGSECNGLVDELLQAGYIRTYPSPSLTAHGLYRMTDRGIAAAQEG*
Ga0126315_100215234	F000230	AGGAG	MSEQARKVENKAIPEWAQGLYYNSGLIKEVLLYHDDEAIYIEHKGKESGIVRFTFEMIEGLKIVEDEAERDGSPQHDGSPQ*
Ga0126315_100215236	F048770	N/A	MYREAIALSIQRHRPDLEVRISPPEAAEEELAAFRPDLLIHDDTVPIPEEVLEGIPTRVEMLYSDSMDARVRAHGMVSQMRDMSTEDLLRTVAVAATIDGVG*