Scaffold Ga0126304_10056292

Overview

Basic Information

• Taxon OID: 3300010037
• Scaffold ID: Ga0126304_10056292
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2400
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8693
  • Long. (^o): -122.4282

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003251	Metagenome / Metatranscriptome	497	Y
F037602	Metagenome / Metatranscriptome	167	N
F042771	Metagenome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126304_100562922	F003251	AGAAGG	VQTKTYTTEVAAKKAAARDYRPAILRLPNGRYACFQAGDALPQGARAVSRWGTDRWHAYE
Ga0126304_100562924	F037602	GGAGG	MAESGGLPGWVEAWVGKVVQVHVHGDPDPLFGVLEDWDRRGVVLRHTQEMVSLTASRVEDVPSEPRMILVTWSSVRYVSVLLEELEEKD*
Ga0126304_100562925	F042771	AGGA	MYSQRQEDLGLFSSHLEAKKSGPLVCPICSQTNTILPKGAPIGEPSGEPIIESEPQFAYAACTNCGYSIFFDTYYLPNTRG*